PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002432-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 449aa    MW: 50097.7 Da    PI: 7.6316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002432-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  WALNUT_00002432-RA 14 KGLWSPEEDEKLLRHITKFGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP

2Myb_DNA-binding46.58.6e-1567110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  WALNUT_00002432-RA  67 RGTFSQEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                         899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.337961IPR017930Myb domain
SuperFamilySSF466893.33E-2912108IPR009057Homeodomain-like
SMARTSM007179.4E-131363IPR001005SANT/Myb domain
PfamPF002497.8E-151461IPR001005SANT/Myb domain
CDDcd001671.94E-111761No hitNo description
PROSITE profilePS5129425.94862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2665116IPR009057Homeodomain-like
SMARTSM007171.8E-1366114IPR001005SANT/Myb domain
PfamPF002491.1E-1367111IPR001005SANT/Myb domain
CDDcd001671.09E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KFGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPVTHKPLT EVENGEDKDT AAKSRDRMSV VVSNELNLLE TQNSKQDAAL LEQRASSIAA  180
QGCYPLDVQG SSIPKTTNCN NSNNLMTPTS NKDFFQDRFV TSHQESSSTD CRSSDFVGYF  240
PLQQLNYTSN ARLPTNSNPI QWFTQSGKTF DMNSEFTSNA VSVLSPSTSS FLPTSTGYKP  300
PPTFPSDNVS IGCFTVNGSR YWEPSAATNN NNCGSGSSSS SAELQSNSLF SWGLADCSTS  360
NKETQIHMME SQPEEIKWSE YFSNPLLMAA ALQTQTPQSL YNEIKSETHL GNDISGTKWP  420
HNQRQGPLQS TDICGKDIQT LTAAFGHTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4104431e-161FJ410443.1 Betula luminifera myb-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051325.10.0Myb domain protein 55
TrEMBLA0A0U3SMK90.0A0A0U3SMK9_BETPL; MYB61 protein
STRINGPOPTR_0014s10680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108333103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-94myb domain protein 55